5' end of L1 retrotransposon, L1PA13_5end subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
L1PA13_5end represents the 5' end of L1PA13 (mostly) & L1PA15 LINE1 elements. ORF1 starts at pos. 1667.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2881 positions long. The average length of non-redundant hits to the model is 1243.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1PA13_5 [Requires Repbase registration]