L1MEi_5end (DF0000313)

5' end of L1 retrotransposon, L1MEi_5end subfamily


Contains a Gag ORF1 (~630-1610); the Pol ORF2 starts at ~2055. Substitution level in the reconstructed Laurasiatherian genome is 32%.


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 2212 positions long. The average length of non-redundant hits to the model is 434.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1181 81311 591 54485
Homo sapiens 4740 126815 3768 104115

External Database Links

None recorded for this entry