L1ME3B_3end (DF0000298)

3' end of L1 retrotransposon, L1ME3B_3end subfamily

Description

L1ME3B_3end contain a (near) consensus target site for Charlie type DNA transposon at pos 396-403 (CCCTAGAG). These sites are often occupied (in either orientation) by contemporary or somewhat younger elements (like MER113).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 989 positions long. The average length of non-redundant hits to the model is 330.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1626 181623 785 147390
Homo sapiens 5003 324203 4005 269832

External Database Links

None recorded for this entry