L1ME3_3end (DF0000296)

3' end of L1 retrotransposon, L1ME3_3end subfamily

Description

ORF2 ends at bp 675

Synonyms: L1ME3

References

  1. Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment.
    Iris FJ, Bougueleret L, Prieur S, Caterina D, Primas G, Perrot V, Jurka J, Rodriguez-Tome P, Claverie JM, Dausset J;
    Nat Genet 1993;3:137-145 Pubmed

  2. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 909 positions long. The average length of non-redundant hits to the model is 335.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 2151 185860 1274 153497
Homo sapiens 4933 326915 4171 277942

External Database Links

  • Repbase : L1ME3 [Requires Repbase registration]