L1MD3_3end (DF0000289)

3' end of L1 retrotransposon, L1MD3_3end subfamily


This model only contains a partial 3' UTR reconstruction. Position ~626-750 is derived from a MaLR LTR insertion (MLT1F1 subfamily).

Synonyms: L1MD3


  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 2742 positions long. The average length of non-redundant hits to the model is 363.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 2952 200504 2064 164374
Homo sapiens 6003 378740 5061 315511

External Database Links

  • Repbase : L1MD3 [Requires Repbase registration]