3' end of L1 retrotransposon, L1MD3_3end subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This model only contains a partial 3' UTR reconstruction. Position ~626-750 is derived from a MaLR LTR insertion (MLT1F1 subfamily).
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
Smit AF, TÃ³th G, Riggs AD, Jurka J;
J Mol Biol 1995;246:401-417 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2742 positions long. The average length of non-redundant hits to the model is 363.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1MD3 [Requires Repbase registration]