L1MD2_3end (DF0000287)

3' end of L1 retrotransposon, L1MD2_3end subfamily

Description

ORF2 ends at bp ~675

Synonyms: L1MD2

References

  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1106 positions long. The average length of non-redundant hits to the model is 387. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 2574 174339 1802 148024
Homo sapiens 6173 302461 5543 259749

External Database Links

  • Repbase : L1MD2 [Requires Repbase registration]