L1MC2_3end (DF0000276)

3' end of L1 retrotransposon, L1MC2_3end subfamily

Description

ORF2 ends at bp ~675

Synonyms: L1MC2

References

  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

  2. Medium reiteration frequency repetitive sequences in the human genome.
    Kaplan DJ, Jurka J, Solus JF, Duncan CH;
    Nucleic Acids Res 1991;19:4731-4738 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1091 positions long. The average length of non-redundant hits to the model is 405.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 2145 165138 1525 139010
Homo sapiens 4180 277995 3753 236441

External Database Links

  • Repbase : L1MC2 [Requires Repbase registration]