L1MB3_3end (DF0000269)

3' end of L1 retrotransposon, L1MB3_3end subfamily

Description

ORF2 ends at bp ~675

Synonyms: L1MB3

References

  1. Medium reiteration frequency repetitive sequences in the human genome.
    Kaplan DJ, Jurka J, Solus JF, Duncan CH;
    Nucleic Acids Res 1991;19:4731-4738 Pubmed

  2. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 930 positions long. The average length of non-redundant hits to the model is 395.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 4329 192769 3323 160977
Homo sapiens 9377 302806 8805 261447

External Database Links

  • Repbase : L1MB3 [Requires Repbase registration]