L1MB2_3end (DF0000268)

3' end of L1 retrotransposon, L1MB2_3end subfamily

Description

ORF2 ends at bp ~675

Synonyms: L1MB2

References

  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 918 positions long. The average length of non-redundant hits to the model is 371. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 2797 191350 2052 160665
Homo sapiens 4675 301826 4215 261076

External Database Links

  • Repbase : L1MB2 [Requires Repbase registration]