L1MB1_3end (DF0000267)

3' end of L1 retrotransposon, L1MB1_3end subfamily

Description

ORF2 ends at bp ~675

Synonyms: L1MB1

References

  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 915 positions long. The average length of non-redundant hits to the model is 362.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1665 189161 1179 160396
Homo sapiens 3721 295605 3336 257098

External Database Links

  • Repbase : L1MB1 [Requires Repbase registration]