L1MA9_3end (DF0000266)

3' end of L1 retrotransposon, L1MA9_3end subfamily

Description

ORF2 ends at bp ~684

Synonyms: L1MA9

References

  1. Identification and characterization of new human medium reiteration frequency repeats.
    Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
    Nucleic Acids Res 1993;21:1273-1279. Pubmed

  2. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1059 positions long. The average length of non-redundant hits to the model is 400.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 4072 197584 2989 164998
Homo sapiens 8637 322175 8098 273322

External Database Links

  • Repbase : L1MA9 [Requires Repbase registration]