L1MA5A_3end (DF0000262)

3' end of L1 retrotransposon, L1MA5A_3end subfamily

Description

ORF2 ends at bp ~684

Synonyms: L1MA5A

References

  1. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1044 positions long. The average length of non-redundant hits to the model is 339.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 896 183608 548 155215
Homo sapiens 2395 289563 2108 249721

External Database Links

  • Repbase : L1MA5A [Requires Repbase registration]