L1MA5_3end (DF0000261)
3' end of L1 retrotransposon, L1MA5_3end subfamily
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ORF2 ends at bp ~684
Synonyms: L1MA5
References
-
Identification and characterization of new human medium reiteration frequency repeats.
Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
Nucleic Acids Res 1993;21:1273-1279. Pubmed -
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
Smit AF, Tóth G, Riggs AD, Jurka J;
J Mol Biol 1995;246:401-417 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LINE | |
| Superfamily | L1 |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1047 positions long. The average length of non-redundant hits to the model is 349.2. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 3477 | 191301 | 2428 | 160774 |
| Homo sapiens | 2559 | 301785 | 2395 | 260850 |
External Database Links
- Repbase : L1MA5 [Requires Repbase registration]