L1MA5_3end (DF0000261)

3' end of L1 retrotransposon, L1MA5_3end subfamily

Description

ORF2 ends at bp ~684

Synonyms: L1MA5

References

  1. Identification and characterization of new human medium reiteration frequency repeats.
    Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
    Nucleic Acids Res 1993;21:1273-1279. Pubmed

  2. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
    Smit AF, Tóth G, Riggs AD, Jurka J;
    J Mol Biol 1995;246:401-417 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1047 positions long. The average length of non-redundant hits to the model is 349.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 3477 191301 2428 160774
Homo sapiens 2559 301785 2395 260850

External Database Links

  • Repbase : L1MA5 [Requires Repbase registration]