L1M2_5end (DF0000229)

5' end of L1 retrotransposon, L1M2_5end subfamily

Description

5' end of LINE elements with L1MA4A subfamily 3' ends, comprising the 5' UTR, ORF1 and part of ORF2.

Synonyms: L1M2_5

References

  1. Interspersed repetitive DNA sequences of the human genome: are they transposons?
    Jagadeeswaran P, Biro PA, Tuan D, Pan J, Forget BG, Weissman SM;
    Prog Clin Biol Res 1982;103:29-35 Pubmed

  2. L1 repeat elements in the human epsilon-G gamma-globin gene intergenic region: sequence analysis and concerted evolution within this family.
    Rogan PK, Pan J, Weissman SM;
    Mol Biol Evol 1987;4:327-342 Pubmed

  3. Identification and characterization of new human medium reiteration frequency repeats.
    Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF;
    Nucleic Acids Res 1993;21:1273-1279. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 2904 positions long. The average length of non-redundant hits to the model is 783.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1896 61734 1386 43626
Homo sapiens 10725 106366 10230 87574

External Database Links

  • Repbase : L1M2_5 [Requires Repbase registration]