L1M1_5end (DF0000227)

5' end of L1 retrotransposon, L1M1_5end subfamily

Description

5' end of L1M1 LINE1 elements associated with L1MA1 to L1MA3 subfamily 3' UTRs. ORF1 is from pos 2040-3023, ORF2 starts at 3529.

Synonyms: L1M1_5

References

  1. Paucity of novel short interspersed repetitive element (SINE) families in human DNA and isolation of a novel MER repeat.
    Rubin CM, Leeflang EP, Rinehart FP, Schmid CW;
    Genomics 1993;18:322-328 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 3675 positions long. The average length of non-redundant hits to the model is 1343.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 6867 96690 6639 81036

External Database Links

  • Repbase : L1M1_5 [Requires Repbase registration]