5' end of L1 retrotransposon, L1M1_5end subfamily
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5' end of L1M1 LINE1 elements associated with L1MA1 to L1MA3 subfamily 3' UTRs. ORF1 is from pos 2040-3023, ORF2 starts at 3529.
Paucity of novel short interspersed repetitive element (SINE) families in human DNA and isolation of a novel MER repeat.
Rubin CM, Leeflang EP, Rinehart FP, Schmid CW;
Genomics 1993;18:322-328 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3675 positions long. The average length of non-redundant hits to the model is 1343.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1M1_5 [Requires Repbase registration]