HSMAR1 (DF0000212)
TcMar-Mariner DNA transposon, HSMAR1 subfamily
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
30 bp terminal inverted repeats, TA target site.
References
-
Human and other mammalian genomes contain transposons of the mariner family.
Auge-Gouillou C, Bigot Y, Pollet N, Hamelin MH, Meunier-Rotival M, Periquet G;
FEBS Lett 1995;368:541-546 Pubmed -
Identification in the human genome of mobile elements spread by DNA-mediated transposition.
Morgan GT;
J Mol Biol 1995;254:1-5 Pubmed -
Tiggers and DNA transposon fossils in the human genome.
Smit AF, Riggs AD;
Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | TcMar-Mariner |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1287 positions long. The average length of non-redundant hits to the model is 658.7. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Homo sapiens | 704 | 5016 | 511 | 608 |
External Database Links
- Repbase : HSMAR1 [Requires Repbase registration]