Internal region of ERV1 endogenous retrovirus, HERVS71 subfamily
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The associated long terminal repeats are LTR6A and LTR6B.
S71 is a phylogenetically distinct human endogenous retroviral element with structural and sequence homology to simian sarcoma virus (SSV).
Werner T, Brack-Werner R, Leib-Moesch C, Backhaus H, Erfle V, Hehlmann R;
Virology 1990;174:225-238 Pubmed
Human endogenous retrovirus HC2 is a new member of the S71 retroviral subgroup with a full-length pol gene.
Kabat P, Tristem M, Opavsky R, Pastorek J;
Virology 1996;226:83-94 Pubmed
Identification of endogenous retroviral sequences based on modular organization: proviral structure at the SSAV1 locus.
Blusch JH, Haltmeier M, Frech K, Sander I, Leib-Mosch C, Brack-Werner R, Werner T;
Genomics 1997;43:52-61 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 8978 positions long. The average length of non-redundant hits to the model is 2063.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HERVS71 [Requires Repbase registration]