Internal region of ERVK endogenous retrovirus, HERVK9 subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The associated long terminal repeat is MER9 and its variants. Features: gag (~123-1559), protease (~1421-2365), polymerase (~2257-5097), env (~4883-5694). Insertion variants found at position 5689 (661 bp insert) and position 5195 (206 bp insert). The original consensus was generated from 73 proviral loci.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6021 positions long. The average length of non-redundant hits to the model is 1808.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HERVK9I [Requires Repbase registration]