Internal region of ERVK endogenous retrovirus, HERVK22 subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The long terminal repeat associated with this ERVK is LTR22C0, but there are several variant LTR22 subfamilies. These produce 6 bp TSDs. Features: Methionine PBS (~3-20), gag (~138-1692), protease (~1533-2327), pol (~2270-5002), env (~4779-end), and polypyrimidine tract (~6810-6823) Two frequently observed deletions: (a) gag-protease region (~768-2303 and (b) env region (~5314-6641).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6837 positions long. The average length of non-redundant hits to the model is 1598.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HERVK22I [Requires Repbase registration]