HERVH (DF0000183)

Internal region of ERV1 endogenous retrovirus, HERVH subfamily

Description

The long terminal repeat associated with HERVH is LTR7. The putative env gene, consisting of about 1800 base pairs, has two open reading frames interrupted by a termination codon. The amino acid sequence of this region shows significant homology to those of other retroviral envelope proteins and contains eight potential glycosylation sites. It is estimated that there are about 100 copies of RTVL-H elements containing the env gene per haploid human genome. Note that this estimate is distinct from simply tallying all hits (long and short) from this model.

References

  1. Presence of env genes in members of the RTVL-H family of human endogenous retrovirus-like elements.
    Hirose Y, Takamatsu M, Harada F;
    Virology 1993;192:52-61 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 7713 positions long. The average length of non-redundant hits to the model is 1222.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 3652 11777 3622 9264

External Database Links

  • Repbase : HERVH [Requires Repbase registration]