Internal region of ERV1 endogenous retrovirus, HERVFH21 subfamily
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
HERVFH21 is the internal region of HERVH-related endogenous retrovirus, and is flanked by LTR21 long terminal repeats, and has 5 bp TSDs. It has a PBS site similar to Phe tRNA binding site in intracisternal A-particles from mouse and hamster genomes.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6529 positions long. The average length of non-redundant hits to the model is 1133.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HERVFH21I [Requires Repbase registration]