HERV1_I (DF0000163)

Internal region of an ERV1 endogenous retrovirus, HERV1_I subfamily

Description

The associated LTRs are the HERV1_LTR variants. Target site duplications are 4bp. The HERV1_I consensus encodes gag, protease, reverse transcriptase, RNase H, integrase and envelope proteins. HERV1 elements in the genome are ~6% diverged from the HERV1_I consensus.

Synonyms: HERV15I

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 8801 positions long. The average length of non-redundant hits to the model is 1051.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 149 8531 121 6364

External Database Links