ERVL endogenous retrovirus, HERV16 subfamily (internal)
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTRs of HERV16 are listed in Repbase as LTR16 sequences. HERV16 is related to HERVL and is relatively old (>20% divergence from consensus). Bases 300 to 1300 encoded a GAG protein closely similar to the murine "retrovirus restriction polypeptide" (PIDs e24674 and e242676).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4996 positions long. The average length of non-redundant hits to the model is 575.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HERV16 [Requires Repbase registration]