Helitron1Nb_Mam (DF0000158)

Helitron DNA transposon, Helitron1Nb_Mam subfamily

Description

Helitrons are thought to transpose with a rolling circle mechanism, and represent a distinct class of DNA transposon. Helitron1Nb_Mam represents a non-autonomous helitron fossil found broadly in mammals. Helitron1Nb_Mam is identical to Helitron1Na_Mam except over the region 696-913 in "1Nb" and 696-859 in "1Na", where they are unrelated.

References

  1. Helitrons on a roll: eukaryotic rolling-circle transposons.
    Kapitonov VV, Jurka J;
    Trends Genet 2007;23:521-529 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Rolling Circle
Superfamily Helitron Article

Hit Statistics

The model is 1116 positions long. The average length of non-redundant hits to the model is 318.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 56 129 37 79
Homo sapiens 246 705 185 524

External Database Links