Eulor9B (DF0000140)

Eulor9B (Euteleostomi-conserved low frequency repeat 9B)

Description

Putative DNA transposon (assignment unclear). Present in mammals and birds (~40 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. Eulor9B is slightly more similar to the reverse complement of Eulor9A.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Hit Statistics

The model is 240 positions long. The average length of non-redundant hits to the model is 154.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 21 95 12 48
Homo sapiens 49 310 23 109

External Database Links