Eulor8 (DF0000138)

Eulor8 (Euteleostomi-conserved low frequency repeat 8)

Description

Putative DNA transposon (assignment unclear). Eulor8 forms an imperfect 562 bp hairpin, with no tail. Element boundary unclear. Ends unsure, though CAG...CTG make for familiar termini flanked by TA TSDs.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar?

Note: Uncertain classification.

Hit Statistics

The model is 562 positions long. The average length of non-redundant hits to the model is 267. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 103 190 84 155
Homo sapiens 175 327 138 259

External Database Links