Eulor6D (DF0000135)

Eulor6D (Euteleostomi-conserved low frequency repeat 6D)

Description

Putative DNA transposon (assignment unclear). Present in ~100 copies in the human genome, ~100 in platypus, also detected in Xenopus. Position (roughly) 1-162 is an imperfect hairpin.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 302 positions long. The average length of non-redundant hits to the model is 199.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 54 95 36 49
Homo sapiens 106 181 79 118

External Database Links