Eulor5B (DF0000131)

Eulor5B (Euteleostomi-conserved low frequency repeat 5B)

Description

Putative DNA transposon (assignment unclear). Present in ~50 copies in mammals and chicken, also detected in Xenopus. The sequence is an (imperfect) hairpin. Other members of the Eulor5/6 group all have a non-palindromic region downstream, but this his not been detected in Eulor5B yet.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 192 positions long. The average length of non-redundant hits to the model is 147.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 46 78 25 32
Homo sapiens 69 110 43 52

External Database Links