Eulor5A (DF0000130)
Eulor5A (Euteleostomi-conserved low frequency repeat 5A)
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. The hairpin of Eulor5A/B and Eulor6A-E are at the same position and up to 70% similar. The termini are also similar.
References
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Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
Genome Res 2007;17:992-1004 Pubmed -
Repetitive sequences in complex genomes: structure and evolution.
Jurka J, Kapitonov VV, Kohany O, Jurka MV;
Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | Undefined |
Note: Uncertain classification.
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 316 positions long. The average length of non-redundant hits to the model is 198.9. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 76 | 113 | 61 | 89 |
| Homo sapiens | 166 | 237 | 124 | 174 |