Eulor2A (DF0000125)

Eulor2A (Euteleostomi-conserved low frequency repeat 2A)

Description

Putative DNA transposon (assignment unclear). Present in chicken (~200 copies) and mammals (~150 copies). Split into two subfamilies (Eulor2A and 2B), differing mainly by a 31bp indel. Like Eulor1, Eulor2 subfamilies also have a characteristic hairpin-tail structure. Hairpin (roughly) pos 8-188.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 306 positions long. The average length of non-redundant hits to the model is 188.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 51 99 30 52
Homo sapiens 105 181 71 114

External Database Links