Eulor11 (DF0000123)

Eulor11 (Euteleostomi-conserved low frequency repeat 11)

Description

Putative DNA transposon (assignment unclear). Identified in both mammals and birds. Reconstructed from chicken DNA. Like most Eulor-type repeats, this repeat has a secondary structure (imperfect hairpin) followed by a 50 bp "tail." The tail region is less conserved in mammals than the secondary structure. Over 300 copies in alligator. Termini uncertain; no similar TEs.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Hit Statistics

The model is 552 positions long. The average length of non-redundant hits to the model is 249.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 46 56 42 50
Homo sapiens 112 140 81 97

External Database Links