Eulor10 (DF0000122)

Eulor10 (Euteleostomi-conserved low frequency repeat 10)

Description

Putative DNA transposon (assignment unclear). Termini unclear. Eulor10 is present in mammals and birds (~40 copies), and alligator (~100 copies). Follows characteristic hairpin-tail structure, with at least two internal palindromes.

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 317 positions long. The average length of non-redundant hits to the model is 204.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 35 38 26 26
Homo sapiens 55 57 43 45

External Database Links