TcMar DNA transposon, DNA1_Mam subfamily (non-autonomous)
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Present in ~200 copies in human and other placental mammals. It has imperfect TIRs and putative TSDs (TA, included in consensus). The sequence is a near perfect hairpin.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 407 positions long. The average length of non-redundant hits to the model is 236.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|