CR1_Mam (DF0000110)

Mammalian CR1 (Chicken Repeat 1) LINE

Description

Mammalian remnant of an ancient LINE element first identified as CR1 (Chicken Repeat 1). The vast majority of CR1_Mam corresponds to roughly 2/3rds of ORF2 from CR1.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily CR1

Hit Statistics

The model is 2204 positions long. The average length of non-redundant hits to the model is 334.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 355 471 220 267
Homo sapiens 1993 3203 1246 1793

External Database Links

  • Repbase : CR1_Mam [Requires Repbase registration]