Charlie8 (DF0000107)

hAT-Charlie DNA transposon, Charlie8 subfamily (autonomous)

Description

15 bp TIR; 8bp TSD with MER1-like NTCTAGAN bias. Nearly complete transposase (roughly <330-2102).

References

  1. Interspersed repeats and other mementos of transposable elements in mammalian genomes.
    Smit AF;
    Curr Opin Genet Dev 1999;9:657-663 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 2457 positions long. The average length of non-redundant hits to the model is 337.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 312 2124 195 971
Homo sapiens 1633 13986 1405 9805

External Database Links

  • Repbase : CHARLIE8 [Requires Repbase registration]