Charlie6 (DF0000105)

hAT-Charlie DNA transposon, Charlie6 subfamily (autonomous)

Description

Imperfect 16bp TIR. TSD: NTCTAGAN. Charlie6 is unusual in that no common deletion products have been amplified. A member of the MER1-group. ORF roughly at pos. 607-2496.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 3519 positions long. The average length of non-redundant hits to the model is 685.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 50 77 40 54
Homo sapiens 133 479 124 314

External Database Links

  • Repbase : CHARLIE6 [Requires Repbase registration]