hAT-Charlie DNA transposon, Charlie23a subfamily (non-autonomous)
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Charlie23a has 16bp TIRs. The TIR sequence is shared with Charlie18a, and similar to that of Charlie15a and Charlie21a. Present in marsupials; absent from platypus.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 339 positions long. The average length of non-redundant hits to the model is 228.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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