hAT-Charlie DNA transposon, Charlie14a subfamily
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Charlie14a has 16 bp TIRs that closely resemble those of Charlie1. Otherwise the similarity at the DNA level is small. Contains the beginning and end of the coding region. Subfamilies exist with some additional coding sequence, but no full, autonomous element has been detected yet.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1166 positions long. The average length of non-redundant hits to the model is 258.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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