Charlie14a (DF0000088)

hAT-Charlie DNA transposon, Charlie14a subfamily

Description

Charlie14a has 16 bp TIRs that closely resemble those of Charlie1. Otherwise the similarity at the DNA level is small. Contains the beginning and end of the coding region. Subfamilies exist with some additional coding sequence, but no full, autonomous element has been detected yet.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 1166 positions long. The average length of non-redundant hits to the model is 258.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 67 105 37 51
Homo sapiens 340 1598 228 499

External Database Links

None recorded for this entry