Charlie10 (DF0000081)

hAT-Charlie DNA transposon, Charlie10 subfamily (autonomous)

Description

Charlie10 is a full-length hAT-Charlie DNA transposon. MER5C is an internal deletion product of Charlie10. MER5A and B, with 65000 copies by far the most numerous DNA transposon remnants in the human genome, have closely matching termini, but a dissimilar (short) internal region. Charlie10 may have caused their distribution, in analogy to the transposition of Ds1 by Activator. The human gene KIAA1923 (WDR59) appears to be an ancient, domesticated Charlie10 transposase.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 2822 positions long. The average length of non-redundant hits to the model is 364.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 176 607 118 266
Homo sapiens 740 5242 647 3349

External Database Links