hAT-Charlie DNA transposon, Charlie10 subfamily (autonomous)
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Charlie10 is a full-length hAT-Charlie DNA transposon. MER5C is an internal deletion product of Charlie10. MER5A and B, with 65000 copies by far the most numerous DNA transposon remnants in the human genome, have closely matching termini, but a dissimilar (short) internal region. Charlie10 may have caused their distribution, in analogy to the transposition of Ds1 by Activator. The human gene KIAA1923 (WDR59) appears to be an ancient, domesticated Charlie10 transposase.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2822 positions long. The average length of non-redundant hits to the model is 364.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|