AmnSINE2 (DF0000068)

Aminiota SINE2

Description

The copy number ranges from ~100 in the human genome to ~178 in the chicken genome. 45% of human copies are in highly conserved regions. Shows distant similarity to Leu tRNA. Tentatively classified as SINE element. Inverted from UCON3 original. Reference coords 1-78:tRNA-Leu-TTG, 137-264:Deu core, remainder must match an as yet unknown LINE.

Synonyms: UCON3

References

  1. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
    Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
    Genome Res 2007;17:992-1004 Pubmed

  2. Repetitive sequences in complex genomes: structure and evolution.
    Jurka J, Kapitonov VV, Kohany O, Jurka MV;
    Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily tRNA-derived Article

Hit Statistics

The model is 358 positions long. The average length of non-redundant hits to the model is 203.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 85 93 63 66
Homo sapiens 257 274 158 164

External Database Links

  • Repbase : UCON3 [Requires Repbase registration] Report