AmnSINE1 (DF0000067)

Amniota SINE1

Description

Derived from both chicken and human sequence. Reference coords 1-114: 5S-RNA, 168-328: Deu-core, 508-575: LINE2-like tail.

Synonyms: AmnSINE1_GG

References

  1. Functional noncoding sequences derived from SINEs in the mammalian genome.
    Nishihara H, Smit AF, Okada N;
    Genome Res 2006;16:864-874 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily 5S-derived Article

Hit Statistics

The model is 575 positions long. The average length of non-redundant hits to the model is 209.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 398 1046 212 554
Homo sapiens 1261 2098 648 1268

External Database Links

  • Repbase : AmnSINE1_GG [Requires Repbase registration]