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Derived from both chicken and human sequence. Reference coords 1-114: 5S-RNA, 168-328: Deu-core, 508-575: LINE2-like tail.
Functional noncoding sequences derived from SINEs in the mammalian genome.
Nishihara H, Smit AF, Okada N;
Genome Res 2006;16:864-874 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 575 positions long. The average length of non-redundant hits to the model is 209.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : AmnSINE1_GG [Requires Repbase registration]