AluYh9 (DF0000063)

Model

Details

Model (version: 4) Seed source: Repbase + RepeatMasker
Length 311
Seed Sequences 108
Author(s) Finn RD, Hubley R, Jones T, Jurka J, Smit A, Wheeler T
Clade
  • Hominidae
Model Masking None
Consensus Sequence
(model derived)
Show
>DF0000063:AluYh9 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Genome Specific Characteristics

Non-Redundant Coverage, Conservation, and Inserts

Fraction of hits covering each position of the model, and per-position sequence identity and insertion rate based on those hits.

Non-Redundant Coverage

Number of aligned bases per model position, among the non-redundant hits in dfamseq.

Redundant Coverage

Number of aligned bases per model position, using the hits in dfamseq.

False Coverage

Number of aligned bases per model position, using the hits from an artificial sequence devoid of TEs.

Seed Coverage

Number of aligned bases per model position in the 108 deep seed alignment.

Seed Whisker Plot

Representation of the 108 seed alignment sequences, indicating their length distribution across the model.