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Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. AluYc2, AluYc3, and AluYd3a1 are identical. Naming convention suggests AluYc2 is preferred, as seq differs from AluY at 2 positions.
Synonyms: AluYc2; AluYd3a1
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 300 positions long. The average length of non-redundant hits to the model is 205.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : AluYc2 [Requires Repbase registration]