Charlie4a (DF0000025)

hAT-Charlie DNA transposon, Charlie4a subfamily (non-autonomous)

Description

16bp TIR, similar to those of the MER1 family. 8bp TSD, with a bias for NTCTAGAN.

Synonyms: MER80

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 508 positions long. The average length of non-redundant hits to the model is 310.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1004 1376 713 918
Homo sapiens 1890 4065 1755 3146

External Database Links

  • Repbase : MER80 [Requires Repbase registration]