Charlie3 (DF0000023)

hAT-Charlie DNA transposon, Charlie3 subfamily

Description

ORF (roughly 625-2526) encodes a transposase 59% identical to that of CHARLIE1. Common internal deletion products of CHARLIE3 are roughly: 1-272<>2456-2710 (MER1A), and 1-96<>135-272<>2621-2710 (MER1B).

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 2706 positions long. The average length of non-redundant hits to the model is 458.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 746 20647 716 19349

External Database Links

  • Repbase : CHARLIE3 [Requires Repbase registration]