Charlie2a (DF0000019)

hAT-Charlie DNA transposon, Charlie2a subfamily

Description

15-16bp TIR; 8bp TSD. Contains an internal deletion. ORF (roughly 1456-2247) is 56% similar to the C terminal region of the Charlie3 transposase.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 2861 positions long. The average length of non-redundant hits to the model is 391.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 658 1566 392 845
Homo sapiens 1337 5574 1196 4524

External Database Links

  • Repbase : CHARLIE2A [Requires Repbase registration]