5S (DF0000012)

This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.

5S rRNA gene / pseudogene

Description

Human 5S rRNA gene. Archetype sequence: K02217.1:47-166.

References

  1. DNA sequences and transcription factor interactions of active and inactive forms of mammalian 5 S RNA genes.
    Emerson BM, Roeder RG;
    J Biol Chem 1984;259:7926-7935 Pubmed

Classification

Accession Name Wikipedia
Type ncRNA Gene Article
Class rRNA Article
Superfamily 5S Article

Hit Statistics

The model is 121 positions long. The average length of non-redundant hits to the model is 101.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 973 1232 628 763
Homo sapiens 997 1529 620 892
Danio rerio 1708 13432 1442 11103

External Database Links

  • Repbase : 5S [Requires Repbase registration]