7SK (DF0000011)

This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.

7SK ncRNA gene / pseudogene

Description

Human 7SK gene source, X05490.1:245-575. Probably L1-distributed. Does not appear to give rise to repetitive sequences outside eutheria.

References

  1. Structural and functional analysis of a human 7 S K RNA gene.
    Kruger W, Benecke BJ;
    J Mol Biol 1987;195:31-41 Pubmed

  2. Structural and transcriptional properties associated with a member of a new family of conserved short dispersed repeated elements in human DNA.
    Humphries P, MacCabe AP, Spencer RA, Humphries MM, Pearson C;
    Gene 1985;39:255-261 Pubmed

Classification

Accession Name Wikipedia
Type ncRNA Gene Article
Class snRNA Article
Superfamily 7SK Article

Hit Statistics

The model is 331 positions long. The average length of non-redundant hits to the model is 203.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 582 722 509 628
Homo sapiens 1045 1290 732 894

External Database Links

  • Repbase : 7SK [Requires Repbase registration]