Long terminal repeat (THE1A subfamily)
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The LTR of THE1A retrovirus-like MaLR element. Has 5bp TSDs. This entry shows ~90% full-length similarity to THE1B.
Non-Alu family interspersed repeats in human DNA and their transcriptional activity.
Sun L, Paulson KE, Schmid CW, Kadyk L, Leinwand L;
Nucleic Acids Res 1984;12:2669-2690 Pubmed
A transposon-like element in human DNA.
Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L;
Nature 1985;316:359-361 Pubmed
Identification of a new, abundant superfamily of mammalian LTR-transposons.
Nucleic Acids Res 1993;21:1863-1872 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 355 positions long. The average length of non-redundant hits to the model is 325.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : THE1A [Requires Repbase registration]