THE1A (DF0000005)

Long terminal repeat (THE1A subfamily)

Description

The LTR of THE1A retrovirus-like MaLR element. Has 5bp TSDs. This entry shows ~90% full-length similarity to THE1B.

References

  1. Non-Alu family interspersed repeats in human DNA and their transcriptional activity.
    Sun L, Paulson KE, Schmid CW, Kadyk L, Leinwand L;
    Nucleic Acids Res 1984;12:2669-2690 Pubmed

  2. A transposon-like element in human DNA.
    Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L;
    Nature 1985;316:359-361 Pubmed

  3. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 355 positions long. The average length of non-redundant hits to the model is 325.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 3449 84828 3387 75845

External Database Links

  • Repbase : THE1A [Requires Repbase registration]