Tigger3a (DF0000004)

TcMar-Tigger DNA transposon, Tigger3a subfamily

Description

Modified from its former identity as GOLEM_A (two indels, a few bp substitutions). Differences from Tigger3 (formerly GOLEM) and Tigger3b (formerly GOLEM_B) also include internal deletions. 23 bp TIR; TA target site. Tigger3a was originally a subset of MER7A, but the orientation was reversed based on the reconstruction of Tigger3 (or GOLEM) internal sequence.

Synonyms: GOLEM_A

References

  1. Two human repetitive DNA elements: a new interspersed repeat found in the factor IX gene, and a satellite 11 tandem repeat sequence.
    Drinkwater RD, Burgoyne LA, Skinner JD;
    Nucleic Acids Res 1986;14:9541-9541 Pubmed

  2. Novel short interspersed repeat in human DNA.
    Kaplan DJ, Duncan CH;
    Nucleic Acids Res 1990;18:192-192 Pubmed

  3. Tiggers and DNA transposon fossils in the human genome.
    Smit AF, Riggs AD;
    Proc Natl Acad Sci U S A 1996;93:1443-1448 Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 348 positions long. The average length of non-redundant hits to the model is 304. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 4934 15255 4822 13757

External Database Links

  • Repbase : GOLEM_A [Requires Repbase registration]